3AY3

Crystal structure of glucuronic acid dehydrogeanse from Chromohalobacter salexigens

PDB DOI: https://doi.org/10.2210/pdb3AY3/pdb

Classification: OXIDOREDUCTASE
Organism(s): Chromohalobacter salexigens DSM 3043
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-04-26 Released: 2011-10-26
Deposition Author(s): Ahn, J.-W., Kim, S., Kim, K.-J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.289
R-Value Work: 0.215
R-Value Observed: 0.218

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of glucuronic acid dehydrogenase [correction of dehydrogeanse] from Chromohalobacter salexigens

Ahn, J.-W., Lee, S.Y., Kim, S., Kim, S.M., Lee, S.B., Kim, K.-J.

(2012) Proteins 80: 314-318

PubMed: 21987458 Search on PubMed
DOI: https://doi.org/10.1002/prot.23167
Primary Citation of Related Structures:
3AY3

Organizational Affiliation

Pohang Accelerator Laboratory, Pohang University of Science and Technology, Pohang, Kyungbuk, Korea.

Macromolecule Content

Total Structure Weight: 117.69 kDa
Atom Count: 8,646
Modelled Residue Count: 1,064
Deposited Residue Count: 1,068
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NAD-dependent epimerase/dehydratase	A, B, C, D	267	Chromohalobacter salexigens DSM 3043	Mutation(s): 0 Gene Names: Csal_2474
UniProt
Find proteins for Q1QUN7 (Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11)) Explore Q1QUN7 Go to UniProtKB: Q1QUN7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q1QUN7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.289
R-Value Work: 0.215
R-Value Observed: 0.218
Space Group: P 6₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 122.762	α = 90
b = 122.762	β = 90
c = 150.476	γ = 120

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
RESOLVE	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SOLVE	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2011-10-26

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-10-26
Type: Initial release
Version 1.1: 2014-01-29
Changes: Database references
Version 1.2: 2017-10-11
Changes: Refinement description
Version 1.3: 2024-03-13
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.