Download MendeleyCrystal structure of dihydrodipicolinate synthase from Hahella chejuensis at 1.5A resolution
Kang, B.S., Kim, M.H., Kim, G.H., Kim, K.J.To be published.
2RFG
Crystal structure of dihydrodipicolinate synthase from Hahella chejuensis at 1.5A resolution
- PDB DOI: https://doi.org/10.2210/pdb2RFG/pdb
- Classification: LYASE
- Organism(s): Hahella chejuensis
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-09-29 Released: 2007-10-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.178
- R-Value Work: 0.159
- R-Value Observed: 0.160
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Dihydrodipicolinate synthase | 297 | Hahella chejuensis | Mutation(s): 0 EC: 4.2.1.52 |  | |
UniProt | |||||
Find proteins for Q2S9K4 (Hahella chejuensis (strain KCTC 2396)) Explore Q2S9K4 Go to UniProtKB: Q2S9K4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q2S9K4 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EOH Query on EOH | F [auth A] | ETHANOL C2 H6 O LFQSCWFLJHTTHZ-UHFFFAOYSA-N |  | ||
| MG Query on MG | E [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.178
- R-Value Work: 0.159
- R-Value Observed: 0.160
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 67.061 | α = 90 |
| b = 120.644 | β = 90 |
| c = 161.137 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| ADSC | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| AMoRE | phasing |
Entry History
Deposition Data
- Released Date: 2007-10-23 Deposition Author(s): Kang, B.S., Kim, M.H., Kim, G.H., Kim, K.J.
Revision History (Full details and data files)
- Version 1.0: 2007-10-23
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Refinement description, Version format compliance - Version 1.2: 2023-10-25
Changes: Data collection, Database references, Derived calculations, Refinement description
